run_comparison_general: Compare all strata from different stratifications
In eilslabs/YAPSA: Yet Another Package for Signature Analysis

Description Usage Arguments Value See Also Examples

Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of signature exposures. Function similar to compare_SMCs, but without calling plot_strata. First calls

make_strata_df, then
make_comparison_matrix

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run_comparison_general(in_stratification_lists_list, output_path = NULL,
  in_nrect = 5, in_attribute = "", in_remove_signature_ind = NULL,
  in_additional_stratum = NULL)

`in_stratification_lists_list`	List of lists with entries from different (orthogonal) stratification axes or SMCs
`output_path`	Path to directory where the results, especially the figure produced by `corrplot` is going to be stored.
`in_nrect`	Number of clusters in the clustering procedure provided by `corrplot`
`in_attribute`	Additional string for the file name where the figure produced by `corrplot` is going to be stored.
`in_remove_signature_ind`	Omit one of the signatures in `in_signatures_ind_df` for the comparison if non-NULL. The parameter specifies the index of the signature to be removed.
`in_additional_stratum`	Include an additionally supplied stratum in comparison in non-NULL.