compare_SMCs: Compare all strata from different stratifications

In eilslabs/YAPSA: Yet Another Package for Signature Analysis

Description

Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of signature exposures. First calls

• make_strata_df, then

• plot_strata and finally

• make_comparison_matrix

Usage

compare_SMCs(in_stratification_lists_list, in_signatures_ind_df, output_path,
  in_nrect = 5, in_attribute = "")

Arguments

in_stratification_lists_list	List of lists with entries from different (orthogonal) stratification axes or SMCs
in_signatures_ind_df	A data frame containing meta information about the signatures
output_path	Path to directory where the results, especially the figure produced by corrplot is going to be stored.
in_nrect	Number of clusters in the clustering procedure provided by corrplot
in_attribute	Additional string for the file name where the figure produced by corrplot is going to be stored.

Value

The comparison matrix of cosine similarities.

See Also

plot_strata

make_comparison_matrix

Examples

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eilslabs/YAPSA documentation built on May 16, 2019, 1:23 a.m.