normalize_nopair_ctrl_by_col: For data without pairs but with control, normalize them to...

In ecnuzdd/PhosMap: A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data

For data without pairs but with control, normalize them to the control.

Description

For data without pairs but with control, normalize them to the control.

Usage

normalize_nopair_ctrl_by_col(data_frame, experiment_design_file, control_label)

Arguments

data_frame	a data frame as input.
experiment_design_file	a data frame for design of experiment.
control_label	a string for a control.

Value

A data frame after normalization.

Examples

## The process needs to load data from PhosMap datasets stored into FTP server and perform large computation.
## It may take a few minutes.
if(FALSE){
ftp_url <- "ftp://111.198.139.72:4000/pub/PhosMap_datasets/function_demo_data/normalize_nopair_ctrl_by_col.RData"
load_data <- load_data_with_ftp(ftp_url, 'Rdata')
writeBin(load_data, "normalize_nopair_ctrl_by_col.RData")
load("normalize_nopair_ctrl_by_col.RData")

phospho_data_normalize_by_column <- normalize_nopair_ctrl_by_col(
  phospho_data_normalized,
  phosphorylation_experiment_design_file,
  control_label
)
head(phospho_data_normalize_by_column)
}

ecnuzdd/PhosMap documentation built on Dec. 7, 2022, 4:09 a.m.