getRegionDNA: getRegionDNA
In dianalow/SPLINTER: Splice Interpreter of Transcripts
getRegionDNA R Documentation
getRegionDNA
Description
get DNA sequence give a region of interest
Usage
getRegionDNA(roi, genome, introns = FALSE)
Arguments
roi
makeROI object
genome
BSgenome object
introns
TRUE/FALSE. whether to include intronic (lowercase) DNA.
By default returns only exonic (uppercase) DNA.
Value
list of
(1) DNA sequence
(2) Junction start (for primer design)
Author(s)
Diana Low
Examples
suppressMessages(library(BSgenome.Mmusculus.UCSC.mm9))
bsgenome<-BSgenome.Mmusculus.UCSC.mm9
getRegionDNA(roi,bsgenome)
dianalow/SPLINTER documentation built on March 28, 2024, 2:07 p.m.
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| getRegionDNA | R Documentation |
getRegionDNA
Description
get DNA sequence give a region of interest
Usage
getRegionDNA(roi, genome, introns = FALSE)
Arguments
roi |
|
genome |
BSgenome object |
introns |
TRUE/FALSE. whether to include intronic (lowercase) DNA. By default returns only exonic (uppercase) DNA. |
Value
list of
(1) DNA sequence
(2) Junction start (for primer design)
Author(s)
Diana Low
Examples
suppressMessages(library(BSgenome.Mmusculus.UCSC.mm9))
bsgenome<-BSgenome.Mmusculus.UCSC.mm9
getRegionDNA(roi,bsgenome)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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