findCompatibleExon: findCompatibleExon
In dianalow/SPLINTER: Splice Interpreter of Transcripts
View source: R/main_splinter.R
findCompatibleExon R Documentation
findCompatibleExon
Description
Finds compatible exon in annotation with the one present in roi object
Usage
findCompatibleExon(tx, roi, verbose = FALSE)
Arguments
tx
GRangesList object of transcripts
roi
makeROI object contaning event information
verbose
logical. printouts and messages.
Value
list of length 3
(1) GRangesList hits
(2) Number of transcripts
(3) Original number of input transcripts
Author(s)
Diana Low
Examples
compatible_exons <- findCompatibleExon(valid_cds,roi)
dianalow/SPLINTER documentation built on March 28, 2024, 2:07 p.m.
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View source: R/main_splinter.R
| findCompatibleExon | R Documentation |
findCompatibleExon
Description
Finds compatible exon in annotation with the one present in roi object
Usage
findCompatibleExon(tx, roi, verbose = FALSE)
Arguments
tx |
GRangesList object of transcripts |
roi |
|
verbose |
logical. printouts and messages. |
Value
list of length 3
(1) GRangesList hits
(2) Number of transcripts
(3) Original number of input transcripts
Author(s)
Diana Low
Examples
compatible_exons <- findCompatibleExon(valid_cds,roi)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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