filter_hmmer: Filter dataframe depending on a column and a threshold.

In currocam/utilsHMMER: HMMERutils

Filter dataframe depending on a column and a threshold.

Description

Filter dataframe depending on a column and a threshold.

Usage

filter_hmmer(data, threshold = 5e-04, by = "hits.evalue")

Arguments

data	Dataframe which is going to be filtered.
threshold	Value used to filter the dataset.
by	Column which we are going to use to filter the dataset.

Value

A DataFrame filtered.

Examples

data(phmmer_2abl)
filter_hmmer(
    data = phmmer_2abl,
    threshold = 0.0005,
    by = "hits.evalue"
)

currocam/utilsHMMER documentation built on Feb. 19, 2023, 9:54 p.m.