datasetLiverBrainLung: GSE19830 dataset
In ctlab/ClusDec: Clustering approach to solve complete Deconvolution problem
Description
Usage
Format
Details
Source
References
Examples
Description
Gene Expression data from GSE19830 experiment:
3 tissues (liver, brain and lung) were mixed in different proportions:
Usage
1
Format
An object of class 'data.frame'
Details
GSM495209-GSM495211 pure lung samples
GSM495212-GSM495214 pure brain samples
GSM495215-GSM495217 pure liver samples
GSM495218-GSM495220 5
GSM495221-GSM495223 70
GSM495224-GSM495226 25
GSM495227-GSM495229 70
GSM495230-GSM495232 45
GSM495233-GSM495235 55
GSM495236-GSM495238 50
GSM495239-GSM495241 55
GSM495242-GSM495244 50
GSM495245-GSM495247 60
GSM495248-GSM495250 65
Source
References
Shen-Orr SS, Tibshirani R, Khatri P, et al. cell type-specific gene expression differences in complex tissues. Nature methods. 2010;7(4):287-289. doi:10.1038/nmeth.1439.
(PubMed)
Examples
1
2
3
data(datasetLiverBrainLung)
mixedSamples <- datasetLiverBrainLung[, 10:42]
clustered <- preprocessDataset(mixedSamples)
ctlab/ClusDec documentation built on May 14, 2019, 12:29 p.m.
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Description Usage Format Details Source References Examples
Description
Gene Expression data from GSE19830 experiment: 3 tissues (liver, brain and lung) were mixed in different proportions:
Usage
1 |
Format
An object of class 'data.frame'
Details
GSM495209-GSM495211 pure lung samples GSM495212-GSM495214 pure brain samples GSM495215-GSM495217 pure liver samples GSM495218-GSM495220 5 GSM495221-GSM495223 70 GSM495224-GSM495226 25 GSM495227-GSM495229 70 GSM495230-GSM495232 45 GSM495233-GSM495235 55 GSM495236-GSM495238 50 GSM495239-GSM495241 55 GSM495242-GSM495244 50 GSM495245-GSM495247 60 GSM495248-GSM495250 65
Source
References
Shen-Orr SS, Tibshirani R, Khatri P, et al. cell type-specific gene expression differences in complex tissues. Nature methods. 2010;7(4):287-289. doi:10.1038/nmeth.1439. (PubMed)
Examples
1 2 3 | data(datasetLiverBrainLung)
mixedSamples <- datasetLiverBrainLung[, 10:42]
clustered <- preprocessDataset(mixedSamples)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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