gene2pubmed_db: human genes on gene2pubmed_db
In csbl-usp/PubScore: Automatic calculation of literature relevance of genes

Description Usage Format Details References

A subset of the gene2pubmed database downloaded via FTP from ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2pubmed.gz. #' The subset contains only the rows corresponding to humans (#tax_id = 906) The table was downloaded in October 2019.

1	data(gene2pubmed_db)

An object of class data.frame

Contains: 3 columns: #tax_id: The reference ID for the taxon. All are 9606 (humans). GeneID: The Entrez ID code for a given gene. PubMedID: A PubMed ID for a paper that mentions the gene in the "Gene ID" column.

1335548 rows: gene-paper associations in the gene2pubmed database.

Maglott, Donna, et al. 'Entrez Gene: gene-centered information at NCBI.' Nucleic acids research 33.suppl_1 (2005): D54-D58.

csbl-usp/PubScore documentation built on March 13, 2021, 11:03 p.m.