all_counts: all_counts
In csbl-usp/PubScore: Automatic calculation of literature relevance of genes
Description
Usage
Format
Details
Description
A dataframe with all pubmed counts for the genes in the Dengue dataset in relation
to the term "Dengue".
Usage
1
Format
An object of class data.frame
Details
Outcome of the test_score method of the pubscore class.
As this function may take a long time, this dataset speeds up the vignette.
Contains:
3 columns:
#tax_id: The reference ID for the taxon. All are 9606 (humans).
GeneID: The Entrez ID code for a given gene.
PubMedID: A PubMed ID for a paper that mentions the gene in the "Gene ID" column.
1335548 rows: gene-paper associations in the gene2pubmed database.
csbl-usp/PubScore documentation built on March 13, 2021, 11:03 p.m.
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Description Usage Format Details
Description
A dataframe with all pubmed counts for the genes in the Dengue dataset in relation to the term "Dengue".
Usage
1 |
Format
An object of class data.frame
Details
Outcome of the test_score method of the pubscore class. As this function may take a long time, this dataset speeds up the vignette.
Contains: 3 columns: #tax_id: The reference ID for the taxon. All are 9606 (humans). GeneID: The Entrez ID code for a given gene. PubMedID: A PubMed ID for a paper that mentions the gene in the "Gene ID" column.
1335548 rows: gene-paper associations in the gene2pubmed database.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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