curatedTBData: Import curated Tuberculosis Data

In compbiomed/curatedTBData: Curation of existing tuberculosis transcriptomic studies

Import curated Tuberculosis Data

Description

A function to access available curated tuberculosis transcriptomic data from the Bioconductor's ExperimentHub services

Usage

curatedTBData(study_name, dry.run = TRUE, curated.only = TRUE)

Arguments

study_name	A character or vector of characters that contain name of the studies. When any(study_name == "") == TRUE, the function will return all available studies.
dry.run	Boolean. Indicate the whether downloading resources from the ExperimentHub services. If TRUE (Default), return the names of the available resources to be downloaded. If FALSE, start downloading data.
curated.only	Boolean. Indicate whether downloading resources for the curated version. If TRUE (Default), only download the curated gene expression profile and the clinical annotation information If FALSE, download both raw and curated resources.

Value

A list of MultiAssayExperiment objects.

Examples

curatedTBData("GSE39939", dry.run = TRUE)
curatedTBData(c("GSE39939", "GSE39940"), dry.run = FALSE, curated.only = TRUE)

compbiomed/curatedTBData documentation built on March 14, 2024, 2:08 p.m.