DataSummary: Summarized tuberculosis studies included in the curatedTBData

In compbiomed/curatedTBData: Curation of existing tuberculosis transcriptomic studies

Summarized tuberculosis studies included in the curatedTBData

Description

A dataset containing metadata information of 49 tuberculosis studies. The variables are as follows:

Usage

data(DataSummary)

Format

A data frame with 49 rows and 14 variables

Study

Name of the dataset included in the curatedTBData

Platform

Sequencing platform information

GeographicalRegion

Geographical region to which study was conducted

Tissue

Tissue type of which samples were collected

Age

Age range of the study

HIVStatus

Whether dataset contains HIV-infected subjects

DiagnosisMethod

The diagnostic methods used in the stusy to identify tuberculosis subtypes

Control

The number of subjects who were identified as healthy control in the study

LTBI

The number of subjects with latent tuberculosis infection in the study

PTB

The number of subjects with active tuberculosis in the study

OD

The number of subjects with other disease(s) in the study

Total

Total number of subjects included in the study

Notes

Additional notes about the study

GeneralType

Sequencing type of the study (Affymertirx Microarray, Agilent Microarray, Agilent Microarray - Two Color, Illumina Microarray, Illumina RNA-seq, MPIIB Microarray - Two Color, Phalanx Microarray, Phalanx RT-PCR)

Source

• GSE31348: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31348

• GSE36238: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36238

• GSE41055: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41055

• GSE54992: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE54992

• GSE73408: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73408

• GSE107731: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107731

• GSE79362: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE79362

• GSE84076: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84076

• GSE89403: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89403

• GSE94438: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94438

• GSE107991: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107991

• GSE107992: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107992

• GSE107993: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107993

• GSE107994: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107994

• GSE101705: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE101705

• GSE107104: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107104

• GSE112104: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE112104

• GSE19435: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19435

• GSE19439: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19439

• GSE19442: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19442

• GSE19443: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19443

• GSE19444: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19444

• GSE22098: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22098

• GSE29536: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29536

• GSE37250: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37250

• GSE39939: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE39939

• GSE39940: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE39940

• GSE40553: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40553

• GSE42825: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42825

• GSE42826: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42826

• GSE42827: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42827

• GSE42830: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42830

• GSE42831: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42831

• GSE42832: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42832

• GSE50834: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50834

• GSE56153: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56153

• GSE69581: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69581

• GSE83456: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE83456

• GSE83892: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE83892

• GSE25534: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25534

• GSE28623: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28623

• GSE34608: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE34608

• GSE62147: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62147

• GSE81746: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81746

• GSE62525: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62525

• GSE74092: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74092

• GSE6112: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6112

• GSEBruno: https://pubmed.ncbi.nlm.nih.gov/28515464/

• GSETornheim: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP229386

compbiomed/curatedTBData documentation built on March 14, 2024, 2:08 p.m.