read_content: Compute nucleotide content per position. Wrapper function...
In compbiocore/qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
Description
Compute nucleotide content per position. Wrapper function around seqTools.
Usage
1
read_content(fseq, output_file = NA)
Arguments
fseq
a seqTools::fastqq object
output_file
File to write results in CSV format to. Will not write to file if NA. Default NA.
Value
Data frame of nucleotide sequence content per position
Examples
1
2
3
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_content(fseq)
compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.
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Description Usage Arguments Value Examples
Description
Compute nucleotide content per position. Wrapper function around seqTools.
Usage
1 | read_content(fseq, output_file = NA)
|
Arguments
fseq |
a seqTools::fastqq object |
output_file |
File to write results in CSV format to. Will not write to file if NA. Default NA. |
Value
Data frame of nucleotide sequence content per position
Examples
1 2 3 | infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_content(fseq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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