getDE-methods: Differential Expression accessor for a CeTF class object.

In cbiagii/pcitRif: Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis

Differential Expression accessor for a CeTF class object.

Description

The DE accessor access the differential expression resulted from runAnalysis function analysis.

Usage

getDE(x, type = "unique")

## S4 method for signature 'CeTF'
getDE(x, type = "unique")

Arguments

x	CeTF-class object
type	Type of DE matrix: unique and all (default: unique)

Value

Returns the DE genes with the statistics.

See Also

runAnalysis.

Examples

# load the CeTF class object resulted from runAnalysis function
data(CeTFdemo)

getDE(CeTFdemo)

cbiagii/pcitRif documentation built on Feb. 5, 2023, 9:03 p.m.