OutputData-methods: Output data accessor for a CeTF class object.

In cbiagii/pcitRif: Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis

Output data accessor for a CeTF class object.

Description

The output accessor access the output matrices and lists used for RIF and PCIT analysis to both conditions resulted from runAnalysis function analysis.

Usage

OutputData(x, analysis = "rif", type = "tab")

## S4 method for signature 'CeTF'
OutputData(x, analysis = "rif", type = "tab")

Arguments

x	CeTF-class object
analysis	Type of analysis: rif, pcit1, pcit2. The numbers 1 and 2 correspond to the respective condition (default: rif).
type	Type of matrix for PCIT output: tab, adj_raw or adj_sig (default: tab).

Value

Returns the Outputs used for RIF and PCIT.

See Also

runAnalysis.

Examples

# load the CeTF class object resulted from runAnalysis function
data(CeTFdemo)

OutputData(CeTFdemo)

cbiagii/pcitRif documentation built on Feb. 5, 2023, 9:03 p.m.