sampleNameFilter: Retain TCGA sample ids without the final letter designation...
In califano-lab/MOMA: Multi Omic Master Regulator Analysis
Description
Usage
Arguments
Value
Examples
Description
Retain TCGA sample ids without the final letter designation ('A/B/C')
Usage
1
sampleNameFilter(input, desired.len = 15)
Arguments
input
Matrix of expression or protein activity scores. Columns are
sample names, rows are genes. Input can also just be an input vector of
sample names.
desired.len
length to reduce strings to. Default is 15 because of
TCGA naming conventions
Value
An identical matrix with new (shorter) column names,
or a vector with the shortened names.
Examples
1
2
sample.names <- c("TCGA-14-1825-01A", "TCGA-76-4931-01B", "TCGA-06-5418-01A")
sampleNameFilter(sample.names)
califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.
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Description Usage Arguments Value Examples
Description
Retain TCGA sample ids without the final letter designation ('A/B/C')
Usage
1 | sampleNameFilter(input, desired.len = 15)
|
Arguments
input |
Matrix of expression or protein activity scores. Columns are sample names, rows are genes. Input can also just be an input vector of sample names. |
desired.len |
length to reduce strings to. Default is 15 because of TCGA naming conventions |
Value
An identical matrix with new (shorter) column names, or a vector with the shortened names.
Examples
1 2 | sample.names <- c("TCGA-14-1825-01A", "TCGA-76-4931-01B", "TCGA-06-5418-01A")
sampleNameFilter(sample.names)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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