R/data.R

In broadinstitute/PerturbationAMARETTO: Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

#' BatchData
#'
#' A dataset for conducting batch corerction in TCGA samples
#'
#' @format A data frame with 23263 observations and 3 variables:
#' @source \url{AMARETTO}
"BatchData"

#' Driver_Genes
#'
#' A list of cancer driver genes described in literature.
#'
#' @format List
#' @source \url{AMARETTO}
"Driver_Genes"

#' ProcessedDataLIHC
#'
#' A list of dataframes of processed toy example dataset from TCGA-LIHC.
#'
#' @format List
#' @source \url{AMARETTO}
"ProcessedDataLIHC"

#' MsigdbMapping
#'
#' A dataset containing all MSIGDB pathways and their descriptions. .
#'
#' @format List
#' @source \url{AMARETTO}
"MsigdbMapping"