get_firehoseData: get_firehoseData
In broadinstitute/PerturbationAMARETTO: Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
View source: R/amaretto_download.R
Description
Downloading TCGA dataset via firehose
Usage
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get_firehoseData(TargetDirectory = "./",
TCGA_acronym_uppercase = "LUAD", dataType = "stddata",
dataFileTag = "mRNAseq_Preprocess.Level_3", FFPE = FALSE,
fileType = "tar.gz",
gdacURL = "http://gdac.broadinstitute.org/runs/", untarUngzip = TRUE,
printDisease_abbr = FALSE)
Value
result
broadinstitute/PerturbationAMARETTO documentation built on Nov. 4, 2019, 8:14 a.m.
R Package Documentation
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View source: R/amaretto_download.R
Description
Downloading TCGA dataset via firehose
Usage
1 2 3 4 5 6 | get_firehoseData(TargetDirectory = "./",
TCGA_acronym_uppercase = "LUAD", dataType = "stddata",
dataFileTag = "mRNAseq_Preprocess.Level_3", FFPE = FALSE,
fileType = "tar.gz",
gdacURL = "http://gdac.broadinstitute.org/runs/", untarUngzip = TRUE,
printDisease_abbr = FALSE)
|
Value
result
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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