get_marker_genes: Calculate marker genes
In brickyyyy/SC3min: Minimized Single-Cell Consensus Clustering
Description
Usage
Arguments
Value
Examples
Description
Find marker genes in the dataset. The get_auroc is used to calculate
marker values for each gene.
Usage
1
get_marker_genes(dataset, labels)
Arguments
dataset
expression matrix
labels
cell labels corresponding clusters
Value
data.frame containing the marker genes, corresponding cluster indexes
and adjusted p-values
Examples
1
2
d <- get_marker_genes(yan[1:10,], as.numeric(ann[,1]))
d
brickyyyy/SC3min documentation built on May 8, 2019, 8:07 a.m.
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Description Usage Arguments Value Examples
Description
Find marker genes in the dataset. The get_auroc is used to calculate
marker values for each gene.
Usage
1 | get_marker_genes(dataset, labels)
|
Arguments
dataset |
expression matrix |
labels |
cell labels corresponding clusters |
Value
data.frame containing the marker genes, corresponding cluster indexes
and adjusted p-values
Examples
1 2 | d <- get_marker_genes(yan[1:10,], as.numeric(ann[,1]))
d
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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