TCGA_BRCA_CN_segments: Segments of 100 Breast Cancer samples, downloaded from...

In bioinformatic-seragnoli/BOBaFIT: Refitting diploid region profiles using a clustering procedure

Segments of 100 Breast Cancer samples, downloaded from TCGA-BRCA.

Description

Segments of 100 Breast Cancer samples, downloaded from TCGA-BRCA.

Usage

TCGA_BRCA_CN_segments

Format

A data frame with79,607 rows and 12 variables:

chr

Chrosome which the segment belong

start

Starting point of the segment, in Mb

end

Ending point of the segment, in Mb

width

Width of the segment, in Mb

strand

Strand of the segment

ID

Sample name

Num_Probes

Probes involved

Segment_Mean

LogR of the segments

Sample

Barcode of tCGA-BRCA database

arm

Arm information, p o q

chrarm

Chromosomal arm which the segment belong

CN

Segments Copy Number value obtained by the logR

Source

https://portal.gdc.cancer.gov/projects/TCGA-BRCA

bioinformatic-seragnoli/BOBaFIT documentation built on Jan. 29, 2024, 10:27 a.m.