Files in assaron/BioNet
Routines for the functional analysis of biological networks
.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Graph.R
R/HeinzUtils.R
R/IO.R
R/MAUtils.R
R/Plots.R
R/Resampling.R
R/Statistics.R
R/zzz.R
data/pvaluesExample.rda
inst/CITATION
inst/extdata/ALL_cons_n.txt.0.hnz
inst/extdata/ALL_edges_001.txt.0.hnz
inst/extdata/ALL_n_resample.txt.0.hnz
inst/extdata/ALL_nodes_001.txt.0.hnz
inst/extdata/cytoscape.sif
inst/extdata/lymphoma_edges_001.txt.0.hnz
inst/extdata/lymphoma_nodes_001.txt.0.hnz
inst/extdata/n.weight.NA
inst/extdata/weight.EA
man/BioNet-package.Rd
man/aggrPvals.Rd
man/bumOptim.Rd
man/compareNetworks.Rd
man/consensusScores.Rd
man/fbum.Rd
man/fbumLL.Rd
man/fdrThreshold.Rd
man/fitBumModel.Rd
man/getCompScores.Rd
man/getEdgeList.Rd
man/hist.bum.Rd
man/largestComp.Rd
man/largestScoreComp.Rd
man/loadNetwork.sif.Rd
man/loadNetwork.tab.Rd
man/makeNetwork.Rd
man/mapByVar.Rd
man/permutateNodes.Rd
man/piUpper.Rd
man/plot.bum.Rd
man/plot3dModule.Rd
man/plotLLSurface.Rd
man/plotModule.Rd
man/print.bum.Rd
man/pvaluesExample.Rd
man/readHeinzGraph.Rd
man/readHeinzTree.Rd
man/resamplingPvalues.Rd
man/rmSelfLoops.Rd
man/runFastHeinz.Rd
man/runHeinz.Rd
man/save3dModule.Rd
man/saveNetwork.Rd
man/scanFDR.Rd
man/scoreFunction.Rd
man/scoreNodes.Rd
man/scoreOffset.Rd
man/sortedEdgeList.Rd
man/subNetwork.Rd
man/summary.bum.Rd
man/writeHeinz.Rd
man/writeHeinzEdges.Rd
man/writeHeinzNodes.Rd
vignettes/Tutorial-3dplot.pdf
vignettes/Tutorial.Rnw
vignettes/Tutorials.bib
vignettes/bum1.pdf
vignettes/bum2.pdf
vignettes/cytoscape.pdf
vignettes/prec_recall_large.pdf
vignettes/prec_recall_small.pdf
