Files in ajabadi/mixOmics2

Omics Data Integration Project

NEWS_of_README.Rmd R/AUC_ROC.R R/LOGOCV.R R/MCV.block.splsda.R R/MCV.spls.R R/S4-classes.R R/background.predict.R R/bin.color.R R/block.pls.R R/block.plsda.R R/block.spls.R R/block.splsda.R R/check_entry.R R/cim.R R/cimDiablo.R R/circosPlot.R R/color.GreenRed.R R/color.jet.R R/color.mixo.R R/color.spectral.R R/explained_variance.R R/get.confusion_matrix.R R/ica.def.par.R R/image.tune.rcc.R R/imageMap.R R/imgCor.R R/internal_graphic.perf.R R/internal_graphicModule.R R/internal_mint.block.R R/internal_mint.block_helpers.R R/internal_predict.DA.R R/internal_wrapper.mint.R R/internal_wrapper.mint.block.R R/ipca.R R/mat.rank.R R/mint.block.pls.R R/mint.block.plsda.R R/mint.block.spls.R R/mint.block.splsda.R R/mint.pca.R R/mint.pls.R R/mint.plsda.R R/mint.spls.R R/mint.splsda.R R/mixOmics.R R/nearZeroVar.R R/network.R R/nipals.R R/pca.R R/pcasvd.R R/perf.R R/perf.diablo.R R/perf.mint.splsda.R R/plot.pca.R R/plot.perf.R R/plot.rcc.R R/plot.tune.R R/plotArrow.R R/plotDiablo.R R/plotIndiv.R R/plotIndiv.mint.R R/plotIndiv.pca.R R/plotIndiv.pls.R R/plotIndiv.sgcca.R R/plotLoadings.R R/plotLoadings.mint.spls.R R/plotLoadings.mint.splsda.R R/plotLoadings.pca.R R/plotLoadings.spls.R R/plotLoadings.splsda.R R/plotVar.R R/pls.R R/plsda.R R/predict.mint.block.pls.R R/print.methods.R R/rcc.R R/roc_utils.R R/selectVar.R R/sipca.R R/spca.R R/spls.R R/splsda.R R/summary.R R/t.test.process.R R/tune.R R/tune.block.splsda.R R/tune.mint.splsda.R R/tune.pca.R R/tune.rcc.R R/tune.spls.R R/tune.splsda.R R/tune.splslevel.R R/unmap.R R/utils.R R/utils.custom.R R/vip.R R/withinVariation.R R/wrapper.ilr.R R/wrapper.rgcca.R R/wrapper.sgcca.R R/zzz.R README.Rmd README.md buildignore/templates/function-skeleton.R buildignore/utils/examples-runtime.R examples/auroc-example.R examples/ipca-example.R examples/pca-example.R examples/plot-example.R examples/plotIndiv-example.R examples/pls-example.R examples/plsda-example.R examples/sipca-example.R examples/spca-example.R examples/spls-example.R man/auroc.Rd man/background.predict.Rd man/block.pls.Rd man/block.plsda.Rd man/block.spls.Rd man/block.splsda.Rd man/cim.Rd man/cimDiablo.Rd man/circosPlot.Rd man/color.jet.Rd man/color.mixo.Rd man/explained_variance.Rd man/get.confusion_matrix.Rd man/imgCor.Rd man/ipca.Rd man/logratio.transfo.Rd man/map.Rd man/mat.rank.Rd man/mint.block.pls.Rd man/mint.block.plsda.Rd man/mint.block.spls.Rd man/mint.block.splsda.Rd man/mint.pca.Rd man/mint.pls.Rd man/mint.plsda.Rd man/mint.spls.Rd man/mint.splsda.Rd man/mixOmics.Rd man/nearZeroVar.Rd man/network.Rd man/nipals.Rd man/pca.Rd man/perf.Rd man/perf.mint.spls.Rd man/plot.Rd man/plot.rcc.Rd man/plot.sgccda.Rd man/plotArrow.Rd man/plotIndiv.Rd man/plotIndiv.mixo_pls.Rd man/plotLoadings.Rd man/plotVar.Rd man/pls.Rd man/plsda.Rd man/print.mixo_pls.Rd man/rcc.Rd man/selectVar.Rd man/sipca.Rd man/spca.Rd man/spls.Rd man/splsda.Rd man/study_split.Rd man/summary.mixo_pls.Rd man/tune.Rd man/tune.block.splsda.Rd man/tune.mint.splsda.Rd man/tune.pca.Rd man/tune.rcc.Rd man/tune.spls.Rd man/tune.splsda.Rd man/tune.splslevel.Rd man/unmap.Rd man/vip.Rd man/withinVariation.Rd man/wrapper.rgcca.Rd man/wrapper.sgcca.Rd roxygenise.R tests/internals/test-check_generic_args .R tests/internals/test-getDM.R tests/internals/test-getXY.R tests/internals/test-names2mat.R tests/testthat.R tests/testthat/helper-pls.R tests/testthat/test-ipca.R tests/testthat/test-pca.R tests/testthat/test-pls.R tests/testthat/test-sipca.R tests/testthat/test-spca.R tests/testthat/test-spls.R tests/testthat/test-splsda.R