Files in aertslab/cisTopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

R/Annotation.R R/BasicTopicOperations.R R/InitializecisTopic.R R/OverlapcisTopic.R R/PlotCells.R R/RcisTarget.R R/RunModels.R R/cellData_mel.R R/cisTopic.R R/counts_mel.R R/data_exports.R README.md man/GREAT.Rd man/addCellMetadata.Rd man/addRegionMetadata.Rd man/annotateRegions.Rd man/binarizecisTopics.Rd man/binarizedcisTopicsToCtx.Rd man/cellData_mel.Rd man/cellTopicHeatmap.Rd man/cisTopic.Rd man/counts_mel.Rd man/createcisTopicObject.Rd man/createcisTopicObjectFrom10X.Rd man/createcisTopicObjectFrom10Xmatrix.Rd man/createcisTopicObjectFromBAM.Rd man/createcisTopicObjectFromMeth.Rd man/dm3_CtxRegions.Rd man/dm6_CtxRegions.Rd man/getBedFiles.Rd man/getBigwigFiles.Rd man/getCistromeEnrichment.Rd man/getCistromes.Rd man/getRegionsScores.Rd man/getSignaturesRegions.Rd man/hg19_CtxRegions.Rd man/logLikelihoodByIter.Rd man/makeBackgroundFeather.Rd man/mm9_CtxRegions.Rd man/modelMatSelection.Rd man/ontologyDotPlot.Rd man/plotFeatures.Rd man/predictiveDistribution.Rd man/renameCells.Rd man/runCGSModels.Rd man/runDM.Rd man/runPCA.Rd man/runUmap.Rd man/runWarpLDAModels.Rd man/runtSNE.Rd man/scoredRegionsToCtx.Rd man/selectModel.Rd man/show.Rd man/signatureCellEnrichment.Rd man/signaturesHeatmap.Rd man/topicSignaturesMatrix.Rd man/topicsRcisTarget.Rd vignettes/10X_workflow.Rmd vignettes/CompleteAnalysis.Rmd vignettes/Runningwithmm10andhg38.Rmd vignettes/WarpLDA_10X_workflow.Rmd vignettes/WarpLDA_CompleteAnalysis.Rmd