get_params: Extract scone parameters
In YosefLab/scone: Single Cell Overview of Normalized Expression data

get_params

R Documentation

Extract scone parameters

Description

Extract scone parameters

Usage

get_params(x)

## S4 method for signature 'SconeExperiment'
get_params(x)

Arguments

`x`	an object of class `SconeExperiment`.

Value

A data.frame containing workflow parameters for each scone workflow.

Examples

set.seed(42)
mat <- matrix(rpois(500, lambda = 5), ncol=10)
colnames(mat) <- paste("X", 1:ncol(mat), sep="")
obj <- SconeExperiment(mat)
res <- scone(obj, scaling=list(none=identity, uq=UQ_FN),
           run = FALSE, k_ruv=0, k_qc=0, eval_kclust=2)
params = get_params(res)

YosefLab/scone documentation built on Oct. 21, 2024, 4:39 p.m.