readjust_clusters: Repartitions existing clusters to achieve desired...

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Repartitions existing clusters to achieve desired granularity.

Description

By default, minimum number of clusters to be generated is the squareroot of the number of cells.

Usage

readjust_clusters(clusters, data, cellsPerPartition = 100)

Arguments

clusters	List of clusters, each entry being a vector of cells in a cluster.
data	NUM_SAMPLES x NUM_PROTEINS data matrix that was used to generate clusters
cellsPerPartition	the number of cells for a single partition the algorithm should aim for

Value

Repartitioned clusters, such that a desireable number of microclusters is acheived.

YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.