analyze-Vision-method: Main entry point for running VISION Analysis

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Main entry point for running VISION Analysis

Description

The main analysis function. Runs the entire VISION analysis pipeline and returns a VISION object populated with the result.

Usage

## S4 method for signature 'Vision'
analyze(object, tree = FALSE, hotspot = FALSE)

Arguments

object	VISION object
tree	whether to use the TREE slot of the object to calculate values

Value

VISION object

Examples

## Not run: 

vis <- Vision(data = expMat, signatures = sigs)

options(mc.cores=10) # Use 10 cores
vis <- analyze(vis)


## End(Not run)

YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.