depthBasedCladewiseTreeCluster: Performs a breadth first search to create a specific number...
In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds
View source: R/Microclusters.R
depthBasedCladewiseTreeCluster R Documentation
Performs a breadth first search to create a specific number of clusters.
Clusters are split based on depth.
Description
Performs a breadth first search to create a specific number of clusters.
Clusters are split based on depth.
Usage
depthBasedCladewiseTreeCluster(tree, target = 10)
Arguments
tree
object of class phylo
target
number of clusters to attempt to generate
Value
List of clusters, each entry being a vector of indices representing
samples in the cluster.
YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.
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View source: R/Microclusters.R
| depthBasedCladewiseTreeCluster | R Documentation |
Performs a breadth first search to create a specific number of clusters. Clusters are split based on depth.
Description
Performs a breadth first search to create a specific number of clusters. Clusters are split based on depth.
Usage
depthBasedCladewiseTreeCluster(tree, target = 10)
Arguments
tree |
object of class phylo |
target |
number of clusters to attempt to generate |
Value
List of clusters, each entry being a vector of indices representing samples in the cluster.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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