NMetaclusters: NMetaclusters

In SofieVG/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

NMetaclusters

Description

Extracts the number of metaclusters from a FlowSOM object

Usage

NMetaclusters(fsom)

Arguments

fsom	FlowSOM object

Value

The number of metaclusters

Examples

 # Build FlowSom result
 fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM")
 ff <- flowCore::read.FCS(fileName)
 flowSOM.res <- FlowSOM(ff,
                        compensate = TRUE, transform = TRUE, scale = TRUE,
                        colsToUse = c(9, 12, 14:18),
                        maxMeta = 10)
 NMetaclusters(flowSOM.res)

SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.