GetCVs: Get CV values for all clusters
In SofieVG/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
GetCVs R Documentation
Get CV values for all clusters
Description
Get CV values for all clusters
Usage
GetCVs(fsom)
Arguments
fsom
FlowSOM object as generated by the FlowSOM function
or the BuildSOM function
Value
Matrix with coefficient of variation values for each marker
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE,
scale=TRUE,colsToUse=c(9,12,14:18),nClus=10)
cvs <- GetClusterCVs(flowSOM.res)
SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.
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| GetCVs | R Documentation |
Get CV values for all clusters
Description
Get CV values for all clusters
Usage
GetCVs(fsom)
Arguments
fsom |
FlowSOM object as generated by the FlowSOM function or the BuildSOM function |
Value
Matrix with coefficient of variation values for each marker
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM") flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE, scale=TRUE,colsToUse=c(9,12,14:18),nClus=10) cvs <- GetClusterCVs(flowSOM.res)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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