ManualVector: Summarize the gating matrix into one vector, only including...
In SofieVG/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
ManualVector R Documentation
Summarize the gating matrix into one vector, only including the cell types of
interest
Description
Extract the compensated and transformed data and all gate labels.
Usage
ManualVector(manualMatrix, cellTypes)
Arguments
manualMatrix
Matrix containing boolean values, indicating for every
gate (column) whether the cell (row) is part of it or not.
cellTypes
Cell types to use in the summary vector. All others will be
ignored and cells which do not fall in one of these gates
will get the label "Unknown". Order is important!
Value
A factor with one label for every cell
SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.
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| ManualVector | R Documentation |
Summarize the gating matrix into one vector, only including the cell types of interest
Description
Extract the compensated and transformed data and all gate labels.
Usage
ManualVector(manualMatrix, cellTypes)
Arguments
manualMatrix |
Matrix containing boolean values, indicating for every gate (column) whether the cell (row) is part of it or not. |
cellTypes |
Cell types to use in the summary vector. All others will be ignored and cells which do not fall in one of these gates will get the label "Unknown". Order is important! |
Value
A factor with one label for every cell
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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