read_mutation_grange_objects: read_mutation_grange_objects

In RaikOtto/Younikorn: Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

read_mutation_grange_objects

Description

Read the GRange object for a specific library

Usage

read_mutation_grange_objects(
  library_name,
  mutational_weight_inclusion_threshold,
  ref_gen,
  test_mode
)

Arguments

library_name	a character string giving the name of the library
mutational_weight_inclusion_threshold	a numerical giving the lower bound for mutational weight to be included
ref_gen	Reference genome version. All training sets are associated with a reference genome version. Default: GRCH37
test_mode	Is this a test? Just for internal use

Value

The R Table sim_list which contains the CoSMIC CLP fingerprints

RaikOtto/Younikorn documentation built on Oct. 18, 2022, 1:21 a.m.