Files in RaikOtto/Younikorn
Identification of cancer cell lines based on their weighted mutational/ variational fingerprint
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/Add_custom_vcfs.R
R/Create_BED_files.R
R/Identify_VCF_file.R
R/Init_and_load_identification.R
R/Match_query_ccl_with_database.R
R/Parse_COSMIC_CCLE_CCLs.R
R/Parser_scripts.R
R/Show_database_information.R
R/Statistics_identification.R
R/Utility.R
R/add_missing_cls.R
R/remove_custom_vcf_from_uniquorn.R
README.md
inst/.gitignore
inst/CITATION
inst/Libraries/GRCH37/CELLMINER/CCL_List_Uniquorn_DB.RData
inst/Libraries/GRCH37/CELLMINER/W0.25_Uniquorn_DB.RData
inst/Libraries/GRCH37/CELLMINER/W0.5_Uniquorn_DB.RData
inst/Libraries/GRCH37/CELLMINER/W0.excluded_variants_Uniquorn_DB.RData
inst/Libraries/GRCH37/CELLMINER/W0_Uniquorn_DB.RData
inst/Libraries/GRCH37/CELLMINER/W1_Uniquorn_DB.RData
inst/Libraries_Ref_gen_GRCH37_Uniquorn_DB.RData
inst/NEWS.Rd
inst/extdata/HT29.ident.tsv
inst/extdata/HT29.vcf
inst/extdata/HT29_TEST.vcf
man/add_custom_vcf_to_database.Rd
man/add_missing_cls.Rd
man/add_p_q_values_statistics.Rd
man/add_penalty_statistics.Rd
man/create_bed_file.Rd
man/identify_vcf_file.Rd
man/init_and_load_identification.Rd
man/initiate_canonical_databases.Rd
man/match_query_ccl_to_database.Rd
man/parse_ccle_genotype_data.Rd
man/parse_cosmic_genotype_data.Rd
man/parse_vcf_file.Rd
man/parse_vcf_query_into_db.Rd
man/read_library_names.Rd
man/read_mutation_grange_objects.Rd
man/remove_ccls_from_database.Rd
man/remove_library_from_database.Rd
man/show_contained_ccls.Rd
man/show_contained_variants_for_ccl.Rd
man/show_contained_variants_in_library.Rd
man/show_which_ccls_contain_variant.Rd
tests/.DS_Store
tests/testthat.R
tests/testthat/.DS_Store
tests/testthat/test_a_Show_database_information.R
tests/testthat/test_b_identification.R
tests/testthat/test_c_remove_add.R
vignettes/Uniquorn.Rmd
