filterSamples: Filter samples

In QuackenbushLab/yarn: YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization

Filter samples

Description

Filter samples

Usage

filterSamples(obj, ids, groups = colnames(obj), keepOnly = FALSE)

Arguments

obj	ExpressionSet object.
ids	Names found within the groups labels corresponding to samples to be removed
groups	Vector of labels for each sample or a column name of the phenoData slot for the ids to filter. Default is the column names.
keepOnly	Filter or keep only the samples with those labels.

Value

Filtered ExpressionSet object

Examples

data(skin)
filterSamples(skin,ids = "Skin - Not Sun Exposed (Suprapubic)",groups="SMTSD")
filterSamples(skin,ids=c("GTEX-OHPL-0008-SM-4E3I9","GTEX-145MN-1526-SM-5SI9T"))

QuackenbushLab/yarn documentation built on March 7, 2024, 3:53 p.m.