downloadGTEx: Download GTEx files and turn them into ExpressionSet object

In QuackenbushLab/yarn: YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization

Download GTEx files and turn them into ExpressionSet object

Description

Downloads the V6 GTEx release and turns it into an ExpressionSet object.

Usage

downloadGTEx(type = "genes", file = NULL, ...)

Arguments

type	Type of counts to download - default genes.
file	File path and name to automatically save the downloaded GTEx expression set. Saves as a RDS file.
...	Does nothing currently.

Value

Organized ExpressionSet set.

Examples

# obj <- downloadGTEx(type='genes',file='~/Desktop/gtex.rds')

QuackenbushLab/yarn documentation built on March 7, 2024, 3:53 p.m.