tuples-squeezers: Squeeze the tuples out of a tuples-based object

In PeteHaitch/GenomicTuples: Representation and Manipulation of Genomic Tuples

Squeeze the tuples out of a tuples-based object

Description

S4 generic functions for squeezing the tuples out of a tuples-based object. Similar to the S4 generic functions for squeezing the ranges out of a ranged-based object, see granges and grglist.

gtuples returns them as a GTuples object, and gtlist as a GTuplesList object.

Usage

gtuples(x, use.mcols=FALSE, ...)
gtlist(x, use.mcols=FALSE, ...)

Arguments

x	A tuples-based object.
use.mcols	TRUE or FALSE (the default). Whether the metadata columns on x (accessible with mcols(x)) should be propagated to the returned object or not.
...	Additional arguments, for use in specific methods.

Details

The MethylationTuples (https://github.com/PeteHaitch/MethylationTuples) package defines and document methods for various types of tuples-based objects. Other Bioconductor packages might as well.

Note that these functions can be seen as a specific kind of object getters as well as functions performing coercion.

Value

A GTuples object for gtuples.

A GTuplesList object for gtlist.

If x is a vector-like object, the returned object is expected to be parallel to x, that is, the i-th element in the output corresponds to the i-th element in the input. If x has names on it, they're propagated to the returned object. If use.mcols is TRUE and x has metadata columns on it (accessible with mcols(x)), they're propagated to the returned object.

Author(s)

Peter Hickey

See Also

• GTuples and GTuplesList objects.

Examples

## See ?MethPat in the MethylationTuples package (GitHub-only package) for some
## examples.

PeteHaitch/GenomicTuples documentation built on Nov. 5, 2024, 2 p.m.