PeteHaitch/GenomicTuples
Representation and Manipulation of Genomic Tuples

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Search the PeteHaitch/GenomicTuples package
Vignettes
Functions
190
Source code
28
Man pages
16
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PeteHaitch/GenomicTuples: Representation and Manipulation of Genomic Tuples
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API

API for PeteHaitch/GenomicTuples
Representation and Manipulation of Genomic Tuples

Global functions
$,GTuples-method Man page
$<-,GTuples,numeric-method Man page
.GT2DT Man page Source code
.GTuples.asIntegerTuples Source code
.IPDCpp Man page Source code
.allTuplesSortedCpp Man page Source code
.countOverlaps.definition Source code
.duplicated.GTuples Source code
.findEqual.GTuples Man page Source code
.makeNakedMatFromGTuples Source code
.matrixDiffWithRecycling Man page Source code
.onUnload Source code
.order.GTuples Source code
.pcompareGTuplesCpp Man page Source code
.pcompare_GTuples Source code
.sort.GTuples Source code
.unlist_list_of_GTuples Source code
.valid.GTuples Source code
.valid.GTuples.mcols Source code
.valid.GTuples.pos Source code
.valid.GTuplesList Source code
.valid.GTuplesList.mcols Source code
.zero_range Man page Source code
GTuples Man page Man page Source code
GTuples-class Man page
GTuples-comparison Man page
GTuplesList Man page Man page Source code
GTuplesList-class Man page
GenomicTuples-package Man page
IPD Man page
IPD,GTuples-method Man page
IPD,GTuplesList-method Man page
Ops,GTuples,numeric-method Man page
[,GTuples-method Man page
[,GTuplesList,ANY-method Man page
[<-,GTuples-method Man page
[<-,GTuplesList,ANY,ANY,ANY-method Man page
[[<-,GTuplesList,ANY,ANY,ANY-method Man page
as.character,GTuples-method Man page
as.data.frame,GTuples-method Man page
as.factor,GTuples-method Man page
c,GTuples-method Man page
class:GTuples Man page
class:GTuplesList Man page
coerce,GRanges,GTuples-method Man page
coerce,GTuplesList,GRangesList-method Man page
coerce,GTuplesList,data.frame-method Man page
coerce,GTuplesList,list-method Man page
countOverlaps Man page
countOverlaps,GTuples,GTuples-method Man page
coverage,GTuples-method Man page
coverage,GTuplesList-method Man page
disjoin,GTuples-method Man page
disjoin,GTuplesList-method Man page
disjointBins,GTuples-method Man page
distance,GTuples,GTuples-method Man page
distanceToNearest,GTuples,GTuples-method Man page
distanceToNearest,GTuples,missing-method Man page
duplicated,GTuples-method Man page
duplicated.GTuples Man page Source code
elementMetadata,GTuplesList-method Man page
elementMetadata<-,GTuples-method Man page
elementMetadata<-,GTuplesList-method Man page
end,GTuples-method Man page
end,GTuplesList-method Man page
end<-,GTuples-method Man page
end<-,GTuplesList-method Man page
findOverlaps Man page
findOverlaps,GTuples,GTuples-method Man page
findOverlaps-methods Man page
flank,GTuples-method Man page
flank,GTuplesList-method Man page
follow,GTuples,GTuples-method Man page
follow,GTuples,missing-method Man page
gaps,GTuples-method Man page
granges,GTuples-method Man page
gtlist Man page
gtuples Man page
intersect,GTuples,GTuples-method Man page
intra-tuple-methods Man page
is.unsorted,GTuples-method Man page
isDisjoint,GTuples-method Man page
isDisjoint,GTuplesList-method Man page
length,GTuples-method Man page
match,GTuples,GTuples-method Man page
names,GTuples-method Man page
names<-,GTuples-method Man page
narrow Man page
narrow,GTuples-method Man page
nearest,GTuples,GTuples-method Man page
nearest,GTuples,missing-method Man page
nearest-methods Man page
order,GTuples-method Man page
overlapsAny Man page
overlapsAny,GTuples,GTuples-method Man page
pcompare,GTuples,GTuples-method Man page
pgap,GTuples,GTuples-method Man page
pintersect,GTuples,GTuples-method Man page
pintersect,GTuples,GTuplesList-method Man page
pintersect,GTuplesList,GTuples-method Man page
pintersect,GTuplesList,GTuplesList-method Man page
precede,GTuples,GTuples-method Man page
precede,GTuples,missing-method Man page
promoters,GTuples-method Man page
promoters,GTuplesList-method Man page
psetdiff,GTuples,GTuples-method Man page
psetdiff,GTuples,GTuplesList-method Man page
psetdiff,GTuplesList,GTuplesList-method Man page
punion,GTuples,GTuples-method Man page
punion,GTuples,GTuplesList-method Man page
punion,GTuplesList,GTuples-method Man page
range,GTuples-method Man page
range,GTuplesList-method Man page
ranges,GTuples-method Man page
ranges,GTuplesList-method Man page
ranges<-,GTuples-method Man page
ranges<-,GTuplesList-method Man page
rank,GTuples-method Man page
reduce,GTuples-method Man page
reduce,GTuplesList-method Man page
relistToClass,GTuples-method Man page
replaceROWS,NULL-method Man page
resize,GTuples-method Man page
resize,GTuplesList-method Man page
restrict,GTuplesList-method Man page
score,GTuples-method Man page
score,GTuplesList-method Man page
score<-,GTuples-method Man page
score<-,GTuplesList-method Man page
selfmatch,GTuples-method Man page
seqinfo,GTuples-method Man page
seqinfo,GTuplesList-method Man page
seqinfo<-,GTuples-method Man page
seqinfo<-,GTuplesList-method Man page
seqnames,GTuples-method Man page
seqnames,GTuplesList-method Man page
seqnames<-,GTuples-method Man page
seqnames<-,GTuplesList-method Man page
setdiff,GTuples,GTuples-method Man page
shift Man page
shift,GTuples-method Man page
shift,GTuplesList-method Man page
show,GTuples-method Man page
showGTuples Source code
size Man page
size,GTuples-method Man page
size,GTuplesList-method Man page
sort,GTuples-method Man page
sort.GTuples Man page Source code
start,GTuples-method Man page
start,GTuplesList-method Man page
start<-,GTuples-method Man page
start<-,GTuplesList-method Man page
strand,GTuples-method Man page
strand,GTuplesList-method Man page
strand<-,GTuples-method Man page
strand<-,GTuplesList,ANY-method Man page
strand<-,GTuplesList,character-method Man page
subsetByOverlaps Man page
subsetByOverlaps,GTuples,GTuples-method Man page
tile,GTuples-method Man page
trim,GTuples-method Man page
tuples Man page
tuples,GTuples-method Man page
tuples,GTuplesList-method Man page
tuples-squeezers Man page
tuples<- Man page
tuples<-,GTuples-method Man page
tuples<-,GTuplesList-method Man page
union,GTuples,GTuples-method Man page
updateObject,GTuplesList-method Man page
updateObject,GTupless-method Man page
width,GTuples-method Man page
width,GTuplesList-method Man page
width<-,GTuples-method Man page
width<-,GTuplesList-method Man page
window,GTuples-method Man page
PeteHaitch/GenomicTuples documentation built on Nov. 5, 2024, 2 p.m.

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