computeCellHomogeneity: Compute cell homogeneity

In PFPrzytycki/CellWalkR: An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements

Compute cell homogeneity

Description

computeCellHomogeneity() computes the median influence between cells of the same type compared to cells of other types. This serves as a proxy for for how well cells are labeled and can be used to tune parameters such as label edge weight

Usage

computeCellHomogeneity(cellWalk, cellTypes)

Arguments

cellWalk	a cellWalk object
cellTypes	list of names of cell types, if not provided unique labels are used

Value

cell homogeneity

Examples

data("SampleCellWalkRData")
computeCellHomogeneity(SampleCellWalkRData$cellWalk)

PFPrzytycki/CellWalkR documentation built on Oct. 26, 2023, 1:50 p.m.