deepblue_select_regions: select_regions

In MPIIComputationalEpigenetics/DeepBlueR: DeepBlueR

Description

Selects Experiment regions that matches the criteria informed by the operation parameters.

Usage

deepblue_select_regions(experiment_name = NULL, genome = NULL,
  epigenetic_mark = NULL, sample_id = NULL, technique = NULL,
  project = NULL, chromosomes = NULL, start = NULL, end = NULL,
  user_key = deepblue_options("user_key"))

Arguments

experiment_name	- A string or a vector of string (name(s) of selected experiment(s))
genome	- A string or a vector of string (the target genome)
epigenetic_mark	- A string or a vector of string (name(s) of selected epigenetic mark(s))
sample_id	- A string or a vector of string (id(s) of selected sample(s))
technique	- A string or a vector of string (name(s) of selected technique(es))
project	- A string or a vector of string (name(s) of selected projects)
chromosomes	- A string or a vector of string (chromosome name(s))
start	- A int (minimum start region)
end	- A int (maximum end region)
user_key	- A string (users token key)

Value

id - A string (query id)

See Also

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_coverage, deepblue_distinct_column_values, deepblue_extend, deepblue_filter_regions, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_intersection, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_query_experiment_type, deepblue_score_matrix, deepblue_select_annotations, deepblue_select_experiments, deepblue_tiling_regions

Examples

deepblue_select_regions(
    genome="hg19",
    epigenetic_mark = "H3K27ac",
    project = " BLUEPRINT Epigenome")

MPIIComputationalEpigenetics/DeepBlueR documentation built on Aug. 11, 2021, 4:12 p.m.