deepblue_select_experiments: select_experiments

In MPIIComputationalEpigenetics/DeepBlueR: DeepBlueR

Description

Selects regions from Experiments by the experiments names.

Usage

deepblue_select_experiments(experiment_name = NULL, chromosome = NULL,
  start = NULL, end = NULL, user_key = deepblue_options("user_key"))

Arguments

experiment_name	- A string or a vector of string (name(s) of selected experiment(s))
chromosome	- A string or a vector of string (chromosome name(s))
start	- A int (minimum start region)
end	- A int (maximum end region)
user_key	- A string (users token key)

Value

id - A string (query id)

See Also

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_coverage, deepblue_distinct_column_values, deepblue_extend, deepblue_filter_regions, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_intersection, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_query_experiment_type, deepblue_score_matrix, deepblue_select_annotations, deepblue_select_regions, deepblue_tiling_regions

Examples

deepblue_select_experiments(
	experiment_name = c("E002-H3K9ac.narrowPeak.bed",
						"E001-H3K4me3.gappedPeak.bed")
)

MPIIComputationalEpigenetics/DeepBlueR documentation built on Aug. 11, 2021, 4:12 p.m.