deepblue_select_expressions: select_expressions

In MPIIComputationalEpigenetics/DeepBlue-R: DeepBlueR

Description

Select expressions (by their name or ID) as genomic regions from the specified model.

Usage

deepblue_select_expressions(expression_type = NULL, sample_ids = NULL,
  replicas = NULL, identifiers = NULL, projects = NULL,
  gene_model = NULL, user_key = deepblue_options("user_key"))

Arguments

expression_type	- A string (expression type (supported: 'gene'))
sample_ids	- A string or a vector of string (id(s) of selected sample(s))
replicas	- A int or a vector of int (replica(s))
identifiers	- A string or a vector of string (identifier(s) (for genes: ensembl ID or ENSB name).)
projects	- A string or a vector of string (projects(s))
gene_model	- A string (gene model name)
user_key	- A string (users token key)

Value

id - A string (query id)

See Also

Other Expression data: deepblue_list_expressions

Examples

genes_names =
    c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44')
deepblue_select_expressions(
    expression_type="gene",
    sample_ids="s10205",
    identifiers = genes_names,
    gene_model = "gencode v23")

MPIIComputationalEpigenetics/DeepBlue-R documentation built on Aug. 11, 2021, 3:18 p.m.