deepblue_select_annotations: select_annotations

In MPIIComputationalEpigenetics/DeepBlue-R: DeepBlueR

Description

Select regions from the Annotations that match the selection criteria.

Usage

deepblue_select_annotations(annotation_name = NULL, genome = NULL,
  chromosome = NULL, start = NULL, end = NULL,
  user_key = deepblue_options("user_key"))

Arguments

annotation_name	- A string or a vector of string (name(s) of selected annotation(s))
genome	- A string (the target genome)
chromosome	- A string or a vector of string (chromosome name(s))
start	- A int (minimum start region)
end	- A int (maximum end region)
user_key	- A string (users token key)

Value

id - A string (query id)

See Also

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_coverage, deepblue_distinct_column_values, deepblue_extend, deepblue_filter_regions, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_intersection, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_query_experiment_type, deepblue_score_matrix, deepblue_select_experiments, deepblue_select_regions, deepblue_tiling_regions

Examples

deepblue_select_annotations(
    annotation_name = "Cpg Islands",
    genome = "hg19",
    chromosome = "chr1",
    start = 0,
    end = 2000000)

MPIIComputationalEpigenetics/DeepBlue-R documentation built on Aug. 11, 2021, 3:18 p.m.