GCMS_integration: GCMS_integration

In MASHUOA/MassOmics: Data extraction pipeline for large-scale GC-MS metabolomics datasets

GCMS_integration

Description

This is a function for peak integration according to the IDs in identification summary

Usage

GCMS_integration(
  output = "GC-MS Result",
  Ion.bin = 0.5,
  workdir = getwd(),
  intensity_type = c("Peak Area", "Peak Height"),
  GGReport = c("Fast", "Slow")
)

Arguments

output	specify the output file name initial
Ion.bin	the mz tolerance (Da) for peak integration
workdir	locate the working Dir
intensity_type	the type of signal to be reported "Peak Height" or "Peak Area"
GGReport	the reporting mode "Slow" plot every integrated peak, or "Fast" generate an overall report

Value

None

Examples

GCMS_integration()

MASHUOA/MassOmics documentation built on Nov. 3, 2023, 10:48 p.m.