Files in MASHUOA/MassOmics
Data extraction pipeline for large-scale GC-MS metabolomics datasets
.gitignore
DESCRIPTION
DESCRIPTION.dcf
GC-Peak Diagnosis Report.csv
LICENSE
MassOmics/LICENSE
MassOmics/README.md
MassOmics_2.5.0.Rproj
MassOmics_abstract.docx
MassOmics_data_analysis_tutorial.docx
MassOmics_data_analysis_tutorial.htm
MassOmics_data_analysis_tutorial_files/colorschememapping.xml
MassOmics_data_analysis_tutorial_files/filelist.xml
MassOmics_data_analysis_tutorial_files/header.htm
MassOmics_data_analysis_tutorial_files/image001.png
MassOmics_data_analysis_tutorial_files/image002.png
MassOmics_data_analysis_tutorial_files/image003.png
MassOmics_data_analysis_tutorial_files/image004.png
MassOmics_data_analysis_tutorial_files/image005.png
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MassOmics_data_analysis_tutorial_files/image009.jpg
MassOmics_data_analysis_tutorial_files/image010.jpg
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MassOmics_data_analysis_tutorial_files/image018.png
MassOmics_data_analysis_tutorial_files/image019.png
MassOmics_data_analysis_tutorial_files/image020.png
MassOmics_data_analysis_tutorial_files/item0001.xml
MassOmics_data_analysis_tutorial_files/props002.xml
MassOmics_data_analysis_tutorial_files/themedata.thmx
NAMESPACE
R/Data_correction.R
R/GC-MS functions.R
R/GCMS_IonExtractor_logo.gif
R/GCPM_SIlas_Gravida_logo.gif
R/GCPM_SIlas_logo.gif
R/GCPM_SIlas_logo_1.gif
R/GCPM_ganglioside_logogif.gif
R/Intro.gif
R/LCMS_IonExtractor.gif
R/LabLogo.gif
R/MSL_Utilities.R
R/MassOmics.r
R/Parallele.R
R/Randomforest.R
R/SUB_library_functions.R
R/SubjectInfo.gif
R/TMSstandardMix.gif
R/Utilities.R
R/XCMS_parameter_tips.gif
R/install.R
R/kegg_utils.R
R/statistics.R
README.html
README.md
README_files/figure-html/CLuster imaging-1.png
README_files/figure-html/CLuster imaging-2.png
README_files/figure-html/CLuster imaging-3.png
README_files/figure-html/FDR plot-1.png
README_files/figure-html/FDR plot-2.png
README_files/figure-html/VisulazeKmean-1.png
README_files/figure-html/p_Matching_Score_vs_mz plot-1.png
README_files/figure-html/unnamed-chunk-1-1.png
README_files/figure-html/unnamed-chunk-8-1.png
README_files/figure-markdown_github/CLuster imaging-1.png
README_files/figure-markdown_github/CLuster imaging-2.png
README_files/figure-markdown_github/CLuster imaging-3.png
README_files/figure-markdown_github/FDR plot-1.png
README_files/figure-markdown_github/FDR plot-2.png
README_files/figure-markdown_github/VisulazeKmean-1.png
README_files/figure-markdown_github/p_Matching_Score_vs_mz plot-1.png
README_files/figure-markdown_github/unnamed-chunk-1-1.png
README_files/figure-markdown_github/unnamed-chunk-8-1.png
READMEveg.Rmd
Thumbs.db
docs/HiTMaP.html
docs/HiTMaP_files/figure-html/CLuster imaging-1.png
docs/HiTMaP_files/figure-html/CLuster imaging-2.png
docs/HiTMaP_files/figure-html/CLuster imaging-3.png
docs/HiTMaP_files/figure-html/FDR plot-1.png
docs/HiTMaP_files/figure-html/FDR plot-2.png
docs/HiTMaP_files/figure-html/VisulazeKmean-1.png
docs/HiTMaP_files/figure-html/p_Matching_Score_vs_mz plot-1.png
docs/HiTMaP_files/figure-html/unnamed-chunk-1-1.png
docs/HiTMaP_files/figure-html/unnamed-chunk-8-1.png
docs/HiTMaP_files/figure-markdown_github/CLuster imaging-1.png
docs/HiTMaP_files/figure-markdown_github/CLuster imaging-2.png
docs/HiTMaP_files/figure-markdown_github/CLuster imaging-3.png
docs/HiTMaP_files/figure-markdown_github/FDR plot-1.png
docs/HiTMaP_files/figure-markdown_github/FDR plot-2.png
docs/HiTMaP_files/figure-markdown_github/VisulazeKmean-1.png
docs/HiTMaP_files/figure-markdown_github/p_Matching_Score_vs_mz plot-1.png
docs/HiTMaP_files/figure-markdown_github/unnamed-chunk-1-1.png
docs/HiTMaP_files/figure-markdown_github/unnamed-chunk-8-1.png
inst/KNIMEworkflow/MassOmics.knwf
inst/R/GCMS_IonExtractor_logo.gif
inst/R/GCPM_SIlas_Gravida_logo.gif
inst/R/GCPM_SIlas_logo.gif
inst/R/GCPM_SIlas_logo_1.gif
inst/R/GCPM_ganglioside_logogif.gif
inst/R/Intro.gif
inst/R/LCMS_IonExtractor.gif
inst/R/LabLogo.gif
inst/R/MassOmics_latest_version.bat
inst/R/MassOmics_latest_version.lnk
inst/R/SubjectInfo.gif
inst/R/TMSstandardMix.gif
inst/R/XCMS_parameter_tips.gif
inst/R/XLSLibscsv.mac
inst/R/XLSLibscsvbat.mac
inst/R/enhmsbar.mac
inst/R/ico_eyw_icon.ico
inst/R/macros.zip
inst/R/runMassOmics.R
inst/ico_eyw_icon.ico
inst/src/fuzzywuzzy/StringMatcher.py
inst/src/fuzzywuzzy/__init__.py
inst/src/fuzzywuzzy/__pycache__/StringMatcher.cpython-36.pyc
inst/src/fuzzywuzzy/__pycache__/StringMatcher.cpython-37.pyc
inst/src/fuzzywuzzy/__pycache__/__init__.cpython-36.pyc
inst/src/fuzzywuzzy/__pycache__/__init__.cpython-37.pyc
inst/src/fuzzywuzzy/__pycache__/fuzz.cpython-36.pyc
inst/src/fuzzywuzzy/__pycache__/fuzz.cpython-37.pyc
inst/src/fuzzywuzzy/__pycache__/process.cpython-36.pyc
inst/src/fuzzywuzzy/__pycache__/process.cpython-37.pyc
inst/src/fuzzywuzzy/__pycache__/string_processing.cpython-36.pyc
inst/src/fuzzywuzzy/__pycache__/string_processing.cpython-37.pyc
inst/src/fuzzywuzzy/__pycache__/utils.cpython-36.pyc
inst/src/fuzzywuzzy/__pycache__/utils.cpython-37.pyc
inst/src/fuzzywuzzy/fuzz.py
inst/src/fuzzywuzzy/process.py
inst/src/fuzzywuzzy/string_processing.py
inst/src/fuzzywuzzy/utils.py
inst/src/lookup_ri.py
inst/src/masshunter-massOmics-summary-report.py
inst/src/parse_Agilent_CEF.py
inst/src/summary_report_comparator.py
man/Creat_short_cut.Rd
man/GCMS_integration.Rd
man/MZrange_autodetect.Rd
man/MassHunter_id_Summary.Rd
man/MassOmics.GUI.Rd
man/MassOmics.Rd
man/Omics_PCA.Rd
man/Omics_PLSDA.Rd
man/Omics_htest.Rd
man/PeakDiagnosis.Rd
man/SERRF.Rd
man/amdis_id_Summary.Rd
man/create_sub_library.Rd
man/msp_to_msl.Rd
masshunter-massOmics-summary-report.py
massomics_initialization_ubuntu.sh
media/colorschememapping.xml
media/filelist.xml
media/header.htm
media/image001.png
media/image002.png
media/image003.png
media/image004.png
media/image005.png
media/image006.png
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media/image7.png
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media/item0001.xml
media/props002.xml
media/themedata.thmx
parse_MSP_library_to_DF.py
references.bib
summary_report_comparator.py
