API for MASHUOA/MassOmics
Data extraction pipeline for large-scale GC-MS metabolomics datasets
| Global functions | |
|---|---|
| .getPeakGroupsRtMatrix | Source code |
| .peakIndex | Source code |
| .update_feature_definitions | Source code |
| Advanced_building | Source code |
| ChemstationLibraryEntry | Source code |
| Combine_result | Source code |
| Combine_result_file | Source code |
| Creat_short_cut | Man page Source code |
| DataCorrection | Source code |
| Data_prep_area_SERRF | Source code |
| Data_scaling_impute | Source code |
| GCMS_analysis | Source code |
| GCMS_integration | Man page Source code |
| IonExtractor_Window | Source code |
| LcOrbitalTRap | Source code |
| Liz_analysis | Source code |
| MSP_generate_lib2nist | Source code |
| MSP_generate_lib2nist_a | Source code |
| MZrange_autodetect | Man page Source code |
| MassHunter_id_Summary | Man page Source code |
| MassOmics | Man page |
| MassOmics.GUI | Man page Source code |
| Omics_PCA | Man page Source code |
| Omics_PLSDA | Man page Source code |
| Omics_htest | Man page Source code |
| Omics_sPCA | Source code |
| PAPi_formatting | Source code |
| Par_peakintegrate | Source code |
| Par_peakintegrate_slow | Source code |
| PeakDiagnosis | Man page Source code |
| RFtutorial | Source code |
| RT_correction | Source code |
| RT_correction_LORESS | Source code |
| RT_correction_xcms | Source code |
| SERRF | Man page Source code |
| SERRF_native | Source code |
| TMS_analysis | Source code |
| adjustRtimePeakGroups | Source code |
| amdis_id_Summary | Man page Source code |
| autoStopCluster | Source code |
| automakeCluster | Source code |
| buildDatabase | Source code |
| buildLib | Source code |
| casno_reformating | Source code |
| casno_reformating_string | Source code |
| clean.fix | Man page |
| convert_PAPi | Source code |
| create_sub_library | Man page Source code |
| data_test_rename | Source code |
| dev.new.OS | Source code |
| do_Parallel | Source code |
| erah_pipeline | Source code |
| generateMSL_par | Source code |
| getMonomass | Source code |
| getMonomass_para | Source code |
| getPathways | Source code Source code |
| install.MassOmics_dependency | Source code |
| install.mzmatch | Source code |
| kegg_format | Source code |
| load_smpdb | Source code |
| mgf_id_Summary | Source code |
| msp_to_msl | Man page Source code |
| multimodel | Source code |
| mylevels | Source code |
| parse_msl_par | Source code |
| parse_msp | Source code |
| randomForest.default | Source code |
| randomForest_norm_par | Source code |
| readData | Source code |
| readData_serrf_native | Source code |
| read_table_generic | Source code |
| retieve_cpd | Source code |
| run | Source code |
| runFalsePostive | Source code |
| run_PAPi | Source code |
| setworkdir | Source code |
| std | Source code |
| std.outliner.rm | Source code |
| string_slice | Source code |
| testcolume | Source code |
| testpar | Source code |
| windows_filename | Source code |
| windows_filename2 | Source code |
