sc_get_umap_data: Generates UMAP data from sce object
In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing
View source: R/sc_atac_tfidf.R
sc_get_umap_data R Documentation
Generates UMAP data from sce object
Description
Produces a DataFrame containing the UMAP dimensions, as well as all the colData of the sce object for each cell
Usage
sc_get_umap_data(sce, n_neighbours = 30)
Arguments
sce
The SingleCellExperiment object
n_neighbours
No. of neighbours for KNN
Value
A dataframe containing the UMAP dimensions, as well as all the colData of the sce object for each cell
LuyiTian/scPipe documentation built on Dec. 11, 2023, 8:21 p.m.
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View source: R/sc_atac_tfidf.R
| sc_get_umap_data | R Documentation |
Generates UMAP data from sce object
Description
Produces a DataFrame containing the UMAP dimensions, as well as all the colData of the sce object for each cell
Usage
sc_get_umap_data(sce, n_neighbours = 30)
Arguments
sce |
The SingleCellExperiment object |
n_neighbours |
No. of neighbours for KNN |
Value
A dataframe containing the UMAP dimensions, as well as all the colData of the sce object for each cell
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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