get_chromosomes: Get Chromosomes
In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing
View source: R/sc_atac_create_fragments.R
get_chromosomes R Documentation
Get Chromosomes
Description
Gets a list of NamedList of chromosomes and the reference length
acquired through the bam index file.
Usage
get_chromosomes(bam, keep_contigs = "^chr")
Arguments
bam
file path to the bam file to get data from
keep_contigs
regular expression used with grepl to filter reference names
Value
a named list where element names are chromosomes reference names and elements are integer lengths
LuyiTian/scPipe documentation built on Dec. 11, 2023, 8:21 p.m.
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View source: R/sc_atac_create_fragments.R
| get_chromosomes | R Documentation |
Get Chromosomes
Description
Gets a list of NamedList of chromosomes and the reference length acquired through the bam index file.
Usage
get_chromosomes(bam, keep_contigs = "^chr")
Arguments
bam |
file path to the bam file to get data from |
keep_contigs |
regular expression used with grepl to filter reference names |
Value
a named list where element names are chromosomes reference names and elements are integer lengths
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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