sc_atac_create_sce: sc_atac_create_sce()

In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing

sc_atac_create_sce()

Description

sc_atac_create_sce()

Usage

sc_atac_create_sce(
  input_folder = NULL,
  organism = NULL,
  sample_name = NULL,
  feature_type = NULL,
  pheno_data = NULL,
  report = FALSE
)

Arguments

input_folder	The output folder produced by the pipeline
organism	The type of the organism
sample_name	The name of the sample
feature_type	The type of the feature
pheno_data	The pheno data
report	Whether or not a HTML report should be produced

Value

a SingleCellExperiment object created from the scATAC-Seq data provided

Examples

## Not run: 
sc_atac_create_sce(
   input_folder = input_folder,
   organism = "hg38",
   feature_type = "peak",
   report = TRUE)

## End(Not run)    

LuyiTian/scPipe documentation built on Dec. 11, 2023, 8:21 p.m.