export.bedpe: Export interactions in BEDPE format.

In LTLA/fugi: Further Utilities for Genomic Interactions

Description

Exports a GenomicInteractions object to file in the BEDPE (paired-end) format,.

Usage

export.bedpe(GIObject, fn = NULL, score = "counts")

## S4 method for signature 'GenomicInteractions'
export.bedpe(GIObject, fn = NULL,
  score = "counts")

Arguments

GIObject	A GenomicInteractions object.
fn	String containing a path to a file to write the interaction data to.
score	String or integer scalar specifying the metadata column to export as the score field.

Value

If fn is supplied, NULL is invisibly returned and a file is created at fn.

Otherwise, a data.frame is returned containing all of the corresponding information from GIObject.

Author(s)

Malcolm Perry, Elizabeth Ing-Simmons

Examples

data(hic_example_data)
hic_example_data <- updateObject(hic_example_data)
export.bedpe(hic_example_data, fn = tempfile(), score = "counts")

LTLA/fugi documentation built on June 22, 2019, 8:50 p.m.