normalizeDepth: Normalizes counts to CPM
In JEFworks-Lab/veloviz: VeloViz: RNA-velocity informed 2D embeddings for visualizing cell state trajectories
normalizeDepth R Documentation
Normalizes counts to CPM
Description
Normalizes raw counts to counts per million
Usage
normalizeDepth(counts, depthScale = 1e+06, verbose = TRUE)
Arguments
counts
Read count matrix. The rows correspond to genes, columns
correspond to individual cells
depthScale
Depth scaling. Using a million for CPM (default: 1e6)
verbose
Boolean for verbosity setting (default: TRUE)
Value
a normalized matrix
Examples
data(vel)
curr <- vel$current
normalizeDepth(curr)
JEFworks-Lab/veloviz documentation built on Sept. 14, 2022, 4:03 p.m.
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| normalizeDepth | R Documentation |
Normalizes counts to CPM
Description
Normalizes raw counts to counts per million
Usage
normalizeDepth(counts, depthScale = 1e+06, verbose = TRUE)
Arguments
counts |
Read count matrix. The rows correspond to genes, columns correspond to individual cells |
depthScale |
Depth scaling. Using a million for CPM (default: 1e6) |
verbose |
Boolean for verbosity setting (default: TRUE) |
Value
a normalized matrix
Examples
data(vel) curr <- vel$current normalizeDepth(curr)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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