plotSpatial.SpotData: Creates a spatial plot of a slide

In HenrikBengtsson/aroma: An R Object-oriented Microarray Analysis package

Description

Creates a spatial plot of a slide. Note that older versions of the Spot software did not generate result file containing information about the spatial coordinates of the spots. If this is the case, a standard spatial plot is generated.

Usage

## S3 method for class 'SpotData'
plotSpatial(this, what=NULL, slide=1, include=NULL, exclude=NULL, pch=20, yaxt=NULL, cex=NULL, col="auto", palette="redgreen", A.range=c(0, 16), M.range=c(-1, 1), look=c("real", "classic"), style=NULL, ...)

Arguments

slide	The slide to be plotted.
pch	The spot symbol. Default is 20 (solid disk).
yaxt, ...	Parameters accepted by plot.

Value

Returns nothing.

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

For more information see SpotData.

Examples

## Not run: For an example see help(SpotData).

HenrikBengtsson/aroma documentation built on May 7, 2019, 12:56 a.m.