MEDIPS.correlation: Calculates pairwise Pearson correlations between provided...

In HPCBio/MEDIPS-BioC: DNA IP-seq data analysis

Description

The function calculates genome wide Pearson correlations between all pairs of provided MEDIPS SETs.

Usage

MEDIPS.correlation(MSets=NULL, plot = T, method="spearman")

Arguments

MSets	a concatenated set of MEDIPS SETs
plot	if specified, the correlation will be depicted as a scatter plot
method	default: spearman; alternatives: kendall, spearman

Value

a correlation matrix

Author(s)

Lukas Chavez

Examples

library(MEDIPSData)
data(hESCs_MeDIP)
data(DE_MeDIP)

correlation = MEDIPS.correlation(MSets=c(hESCs_MeDIP[[1]], DE_MeDIP[[1]]), plot = FALSE)

HPCBio/MEDIPS-BioC documentation built on May 30, 2019, 12:44 p.m.